Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - regular medium - Chromatin IP against H3K4me1

Sequenced DNA Library

library_name
GSM353631: VCaP_regular_medium_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
9985827
Reads aligned (%)
72.8
Duplicates removed (%)
6.8
Number of peaks
104 (qval < 1E-05)

hg19

Number of total reads
9985827
Reads aligned (%)
72.5
Duplicates removed (%)
7.0
Number of peaks
113 (qval < 1E-05)

Base call quality data from DBCLS SRA