SRX020936
GSM353630: VCaP regular medium FoxA1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - regular medium - Chromatin IP against FoxA1

Sequenced DNA Library

library_name
GSM353630: VCaP_regular_medium_FoxA1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7441496
Reads aligned (%)
73.1
Duplicates removed (%)
15.5
Number of peaks
2438 (qval < 1E-05)

hg19

Number of total reads
7441496
Reads aligned (%)
72.4
Duplicates removed (%)
16.2
Number of peaks
2549 (qval < 1E-05)

Base call quality data from DBCLS SRA