SRX020935
GSM353629: VCaP regular medium Ace H3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - regular medium - Chromatin IP against Ace-H3

Sequenced DNA Library

library_name
GSM353629: VCaP_regular_medium_Ace_H3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7439761
Reads aligned (%)
70.1
Duplicates removed (%)
4.6
Number of peaks
3294 (qval < 1E-05)

hg19

Number of total reads
7439761
Reads aligned (%)
69.7
Duplicates removed (%)
4.8
Number of peaks
3328 (qval < 1E-05)

Base call quality data from DBCLS SRA