SRX020929
GSM353615: LnCaP R1881 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP - R1881 - Chromatin IP against H3K4me3

Sequenced DNA Library

library_name
GSM353615: LnCaP_R1881_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7116945
Reads aligned (%)
66.3
Duplicates removed (%)
48.7
Number of peaks
547 (qval < 1E-05)

hg19

Number of total reads
7116945
Reads aligned (%)
65.7
Duplicates removed (%)
49.7
Number of peaks
545 (qval < 1E-05)

Base call quality data from DBCLS SRA