Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP - Ethanol - Chromatin IP against H3K4me3

Sequenced DNA Library

library_name
GSM353613: LnCaP_Ethl_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
8685503
Reads aligned (%)
62.4
Duplicates removed (%)
41.3
Number of peaks
1558 (qval < 1E-05)

hg19

Number of total reads
8685503
Reads aligned (%)
61.8
Duplicates removed (%)
42.2
Number of peaks
1532 (qval < 1E-05)

Base call quality data from DBCLS SRA