Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - Ethanol - Chromatin IP against Polll

Sequenced DNA Library

library_name
GSM353607: VCaP_Ethl_Polll
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
6930892
Reads aligned (%)
43.6
Duplicates removed (%)
3.5
Number of peaks
227 (qval < 1E-05)

hg19

Number of total reads
6930892
Reads aligned (%)
43.2
Duplicates removed (%)
4.0
Number of peaks
230 (qval < 1E-05)

Base call quality data from DBCLS SRA