Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - Ethanol - Chromatin IP against H3K27me3

Sequenced DNA Library

library_name
GSM353605: VCaP_Ethl_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
6670270
Reads aligned (%)
63.4
Duplicates removed (%)
6.1
Number of peaks
57 (qval < 1E-05)

hg19

Number of total reads
6670270
Reads aligned (%)
62.9
Duplicates removed (%)
6.7
Number of peaks
71 (qval < 1E-05)

Base call quality data from DBCLS SRA