SRX020918
GSM353603: VCaP Ethl H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP - Ethanol - Chromatin IP against H3K4me3

Sequenced DNA Library

library_name
GSM353603: VCaP_Ethl_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9734932
Reads aligned (%)
59.8
Duplicates removed (%)
4.1
Number of peaks
15317 (qval < 1E-05)

hg19

Number of total reads
9734932
Reads aligned (%)
59.4
Duplicates removed (%)
4.5
Number of peaks
15205 (qval < 1E-05)

Base call quality data from DBCLS SRA