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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
SRX020697
DM embyro Stage 11 Digital DNase DS9485 replicate 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
Sequenced DNA Library
library_name
DS9485_11_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
29076896
Reads aligned (%)
48.6
Duplicates removed (%)
24.5
Number of peaks
9013 (qval < 1E-05)
dm3
Number of total reads
29076896
Reads aligned (%)
49.0
Duplicates removed (%)
20.6
Number of peaks
11097 (qval < 1E-05)
Base call quality data from
DBCLS SRA