Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

source_name
Adult_Tissue
tissue type
brain
strain
FVB
antibody
RNAP-II
antibody manufacturer
Abcam
antibody catalog number
ab5408

Sequenced DNA Library

library_name
GSM542586: brain_RNAP-II_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
15096264
Reads aligned (%)
75.9
Duplicates removed (%)
12.7
Number of peaks
4978 (qval < 1E-05)

mm9

Number of total reads
15096264
Reads aligned (%)
75.8
Duplicates removed (%)
13.0
Number of peaks
4982 (qval < 1E-05)

Base call quality data from DBCLS SRA