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For mm10
BigWig
Peak-call (q < 1E-05)
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For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Nr1h2
wikigenes
PDBj
CellType: RAW 264.7
ATCC
MeSH
RIKEN BRC
SRX019778
GSM538015: BLRP-LXRb-GW-ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Nr1h2
Cell type
Cell type Class
Blood
Cell type
RAW 264.7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
BirA/BLRP-LXRb RAW264.7 cells
cell type
RAW264.7 Macrophage cell line
chip antibody
Biotin-tagged LXRb/Streptavidin
treatment
GW3965, 1h
transgenes
LXRb-BLRP, BirA
strain
C57BL/6
genotype/variation
wild-type
chip antibody
Biotin-tagged LXRb bound to NanoLink Streptavidin Magnetic Microspheres (Vendor: SoluLink, cat# M1002-010, lot# LM041609)
Sequenced DNA Library
library_name
GSM538015: BLRP-LXRb-GW-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
23322450
Reads aligned (%)
63.1
Duplicates removed (%)
32.4
Number of peaks
692 (qval < 1E-05)
mm9
Number of total reads
23322450
Reads aligned (%)
63.0
Duplicates removed (%)
32.6
Number of peaks
758 (qval < 1E-05)
Base call quality data from
DBCLS SRA