Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr1h2

Cell type

Cell type Class
Blood
Cell type
RAW 264.7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
BirA/BLRP-LXRb RAW264.7 cells
cell type
RAW264.7 Macrophage cell line
chip antibody
Biotin-tagged LXRb/Streptavidin
treatment
GW3965, 1h
transgenes
LXRb-BLRP, BirA
strain
C57BL/6
genotype/variation
wild-type
chip antibody
Biotin-tagged LXRb bound to NanoLink Streptavidin Magnetic Microspheres (Vendor: SoluLink, cat# M1002-010, lot# LM041609)

Sequenced DNA Library

library_name
GSM538015: BLRP-LXRb-GW-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
23322450
Reads aligned (%)
63.1
Duplicates removed (%)
32.4
Number of peaks
692 (qval < 1E-05)

mm9

Number of total reads
23322450
Reads aligned (%)
63.0
Duplicates removed (%)
32.6
Number of peaks
758 (qval < 1E-05)

Base call quality data from DBCLS SRA