SRX019745
ChIP-Seq analysis of H3K36me3 in human cultured CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
none
BIOMATERIAL_PROVIDER
FHCRC
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Cultured Cells
MARKERS
CD34+
DONOR_ID
cultured CD34_2/20/09
DONOR_AGE
NA
DONOR_HEALTH_STATUS
none
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
short term
sample_term_id
CL_0001059

Sequenced DNA Library

library_name
Solexa-12291
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22081529
Reads aligned (%)
58.9
Duplicates removed (%)
2.6
Number of peaks
119 (qval < 1E-05)

hg19

Number of total reads
22081529
Reads aligned (%)
58.6
Duplicates removed (%)
3.0
Number of peaks
146 (qval < 1E-05)

Base call quality data from DBCLS SRA