SRX019727
ChIP-Seq analysis of H3K9me3 in human Mobilized CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34+
DONOR_ID
RO 01508
DONOR_AGE
36
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000837

Sequenced DNA Library

library_name
Solexa-14519
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15165229
Reads aligned (%)
89.2
Duplicates removed (%)
23.2
Number of peaks
713 (qval < 1E-05)

hg19

Number of total reads
15165229
Reads aligned (%)
86.8
Duplicates removed (%)
28.9
Number of peaks
637 (qval < 1E-05)

Base call quality data from DBCLS SRA