SRX019721
ChIP-Seq analysis of H3K9me3 in human CD19 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
B-cell (CD19+)
Tissue
Blood
Lineage
primaryCells
Description
B Cell , CD19+

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
none
BIOMATERIAL_PROVIDER
FHCRC
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD19 Primary Cells
MARKERS
CD19+
DONOR_ID
CD19_2/20/09
DONOR_AGE
NA
DONOR_HEALTH_STATUS
none
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
not passaged
sample_term_id
CL_0000236

Sequenced DNA Library

library_name
Solexa-12292
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17944661
Reads aligned (%)
71.8
Duplicates removed (%)
11.7
Number of peaks
589 (qval < 1E-05)

hg19

Number of total reads
17944661
Reads aligned (%)
69.8
Duplicates removed (%)
15.9
Number of peaks
535 (qval < 1E-05)

Base call quality data from DBCLS SRA