Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
none
BIOMATERIAL_PROVIDER
FHCRC
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Cultured Cells
MARKERS
CD34+
DONOR_ID
cultured CD34_2/20/09
DONOR_AGE
NA
DONOR_HEALTH_STATUS
none
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
short term
sample_term_id
CL_0001059

Sequenced DNA Library

library_name
Solexa-12458
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
20225722
Reads aligned (%)
63.8
Duplicates removed (%)
15.7
Number of peaks
657 (qval < 1E-05)

hg19

Number of total reads
20225722
Reads aligned (%)
61.3
Duplicates removed (%)
21.6
Number of peaks
539 (qval < 1E-05)

Base call quality data from DBCLS SRA