SRX019616
GSM535980: h Escell H3K4me3 M

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cells
cell type
ES cells
cell line
Shef 4 cells
age
NA
chip antibody/mbd affinity column
anti-H3K4me3 (ab8580; Abcam)

Sequenced DNA Library

library_name
GSM535980: h_Escell_H3K4me3_M
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31876290
Reads aligned (%)
97.8
Duplicates removed (%)
34.6
Number of peaks
32215 (qval < 1E-05)

hg19

Number of total reads
31876290
Reads aligned (%)
97.3
Duplicates removed (%)
35.4
Number of peaks
32137 (qval < 1E-05)

Base call quality data from DBCLS SRA