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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PPARG
wikigenes
PDBj
CellType: Adipose stromal cell
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX019521
GSM534494: hASC t4 PpargAb2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PPARG
Cell type
Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA
Attributes by original data submitter
Sample
source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
PPARG (81B1)
chip antibody
Cell Signaling Technologies, Cat# 2443, Lot# 5/29/2007
Sequenced DNA Library
library_name
GSM534494: hASC_t4_PpargAb2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
43158521
Reads aligned (%)
19.7
Duplicates removed (%)
10.9
Number of peaks
9679 (qval < 1E-05)
hg19
Number of total reads
43158521
Reads aligned (%)
19.5
Duplicates removed (%)
11.7
Number of peaks
9630 (qval < 1E-05)
Base call quality data from
DBCLS SRA