SRX019513
GSM534486: hASC t4 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
H3K4me3
chip antibody
Abcam, Cat# ab8050, Lot# 331024

Sequenced DNA Library

library_name
GSM534486: hASC_t4_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22185886
Reads aligned (%)
38.3
Duplicates removed (%)
9.0
Number of peaks
25221 (qval < 1E-05)

hg19

Number of total reads
22185886
Reads aligned (%)
38.1
Duplicates removed (%)
9.2
Number of peaks
25172 (qval < 1E-05)

Base call quality data from DBCLS SRA