Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
CTCF
chip antibody
Upstate, Cat# 07-729, Lot# 1350637

Sequenced DNA Library

library_name
GSM534485: hASC_t3_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
23990312
Reads aligned (%)
27.9
Duplicates removed (%)
5.8
Number of peaks
24520 (qval < 1E-05)

hg19

Number of total reads
23990312
Reads aligned (%)
27.6
Duplicates removed (%)
6.3
Number of peaks
24433 (qval < 1E-05)

Base call quality data from DBCLS SRA