SRX019508
GSM534481: hASC t3 H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
H3K4me1
chip antibody
Abcam, Cat# ab8895, Lot# 383111

Sequenced DNA Library

library_name
GSM534481: hASC_t3_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19964796
Reads aligned (%)
39.1
Duplicates removed (%)
1.3
Number of peaks
3449 (qval < 1E-05)

hg19

Number of total reads
19964796
Reads aligned (%)
39.0
Duplicates removed (%)
1.4
Number of peaks
3485 (qval < 1E-05)

Base call quality data from DBCLS SRA