SRX019506
GSM534479: hASC t3 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
H3K4me3
chip antibody
Abcam, Cat# ab8050, Lot# 331024

Sequenced DNA Library

library_name
GSM534479: hASC_t3_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21311740
Reads aligned (%)
45.1
Duplicates removed (%)
13.9
Number of peaks
27237 (qval < 1E-05)

hg19

Number of total reads
21311740
Reads aligned (%)
45.0
Duplicates removed (%)
14.1
Number of peaks
27162 (qval < 1E-05)

Base call quality data from DBCLS SRA