SRX019505
GSM534478: hASC t2 CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) adipocyte
chip epitope
CTCF
chip antibody
Upstate, Cat# 07-729, Lot# 1350637

Sequenced DNA Library

library_name
GSM534478: hASC_t2_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
19336161
Reads aligned (%)
40.4
Duplicates removed (%)
11.1
Number of peaks
38343 (qval < 1E-05)

hg38

Number of total reads
19336161
Reads aligned (%)
40.6
Duplicates removed (%)
10.7
Number of peaks
38483 (qval < 1E-05)

Base call quality data from DBCLS SRA