SRX019501
GSM534474: hASC t2 H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) pre-adipocyte
chip epitope
H3K4me1
chip antibody
Abcam, Cat# ab8895, Lot# 383111

Sequenced DNA Library

library_name
GSM534474: hASC_t2_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20553724
Reads aligned (%)
48.5
Duplicates removed (%)
2.0
Number of peaks
11827 (qval < 1E-05)

hg19

Number of total reads
20553724
Reads aligned (%)
48.4
Duplicates removed (%)
2.1
Number of peaks
11878 (qval < 1E-05)

Base call quality data from DBCLS SRA