SRX019498
GSM534471: hASC t1 CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Adipocyte
Cell type
Adipose stromal cell
NA
NA

Attributes by original data submitter

Sample

source_name
hASC, ChIP
cell type
Adipose stromal cell (ASC) pre-adipocyte
chip epitope
CTCF
chip antibody
Upstate, Cat# 07-729, Lot# 1350637

Sequenced DNA Library

library_name
GSM534471: hASC_t1_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17848404
Reads aligned (%)
50.2
Duplicates removed (%)
13.9
Number of peaks
38055 (qval < 1E-05)

hg19

Number of total reads
17848404
Reads aligned (%)
50.0
Duplicates removed (%)
14.3
Number of peaks
38764 (qval < 1E-05)

Base call quality data from DBCLS SRA