ChIP-Atlas: SRX019491

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Adipocyte
Cell type: Adipose stromal cell
NA: NA

Attributes by original data submitter

Sample

source_name: hASC, Whole Cell Extract (input control)
cell type: Adipose stromal cell (ASC) pre-adipocytes and adipocytes
chip epitope: None
chip antibody: None

Sequenced DNA Library

library_name: GSM534464: hASC_WCE
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 70504198
Reads aligned (%): 57.7
Duplicates removed (%): 3.6
Number of peaks: 1793 (qval < 1E-05)

hg19

Number of total reads: 70504198
Reads aligned (%): 57.0
Duplicates removed (%): 5.1
Number of peaks: 1399 (qval < 1E-05)

Base call quality data from DBCLS SRA