SRX019359
GSM461264: IgG ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
cell type
129SV embryonic stem cells
passages
13-18
chip antibody
IgG

Sequenced DNA Library

library_name
GSM461264: IgG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11390022
Reads aligned (%)
66.7
Duplicates removed (%)
10.2
Number of peaks
1854 (qval < 1E-05)

mm9

Number of total reads
11390022
Reads aligned (%)
66.6
Duplicates removed (%)
10.4
Number of peaks
1860 (qval < 1E-05)

Base call quality data from DBCLS SRA