Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
Prefrontal Cortex
MeSH Description
The rostral part of the frontal lobe, bounded by the inferior precentral fissure in humans, which receives projection fibers from the MEDIODORSAL NUCLEUS OF THE THALAMUS. The prefrontal cortex receives afferent fibers from numerous structures of the DIENCEPHALON; MESENCEPHALON; and LIMBIC SYSTEM as well as cortical afferents of visual, auditory, and somatic origin.

Attributes by original data submitter

Sample

source_name
prefrontal cortex
population
NeuN+
age
68
chip antibody
H3K4me3
cell type
neurons from prefrontal cortex

Sequenced DNA Library

library_name
GSM529967: 68 yr old H3K4me3_NeuN+_rep1 #9
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
13512197
Reads aligned (%)
68.4
Duplicates removed (%)
26.0
Number of peaks
27733 (qval < 1E-05)

hg19

Number of total reads
13512197
Reads aligned (%)
68.1
Duplicates removed (%)
26.3
Number of peaks
27700 (qval < 1E-05)

Base call quality data from DBCLS SRA