Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast carcinoma cell line
cell type
breast carcinoma cell line
cell line
MCF-7
antibody
non-specific IgG (Upstate)

Sequenced DNA Library

library_name
GSM530916: IgG_control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
11895248
Reads aligned (%)
86.4
Duplicates removed (%)
2.1
Number of peaks
301 (qval < 1E-05)

hg19

Number of total reads
11895248
Reads aligned (%)
85.8
Duplicates removed (%)
2.8
Number of peaks
621 (qval < 1E-05)

Base call quality data from DBCLS SRA