Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rag2

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
Total thymocytes
genotype
WT
biomaterial_type
primary cells
cell type
total thymocytes
chip antibody
RAG2 (rabbit polyclonal antibody raised to RAG2 aa 70-516 (Leu and Schatz, PMID: 7565717))

Sequenced DNA Library

library_name
GSM530318: Thymocytes_wt_RAG2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
15836506
Reads aligned (%)
62.9
Duplicates removed (%)
14.1
Number of peaks
12912 (qval < 1E-05)

mm9

Number of total reads
15836506
Reads aligned (%)
62.8
Duplicates removed (%)
14.2
Number of peaks
12874 (qval < 1E-05)

Base call quality data from DBCLS SRA