SRX018803
GSM529417: H3K27me3 WIBR1 20% O2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC WIBR1
NA
NA

Attributes by original data submitter

Sample

source_name
hES line WIBR1 20% O2
cell line
hES cell line WIBR1
chip antibody
H3K27me3
oxygen concentration
20% O2

Sequenced DNA Library

library_name
GSM529417: H3K27me3 WIBR1 20% O2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6066129
Reads aligned (%)
48.2
Duplicates removed (%)
3.4
Number of peaks
1621 (qval < 1E-05)

hg19

Number of total reads
6066129
Reads aligned (%)
48.0
Duplicates removed (%)
3.5
Number of peaks
1641 (qval < 1E-05)

Base call quality data from DBCLS SRA