Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC WIBR1
NA
NA

Attributes by original data submitter

Sample

source_name
hES line WIBR1 20% O2
cell line
hES cell line WIBR1
chip antibody
H3K4me3
oxygen concentration
20% O2

Sequenced DNA Library

library_name
GSM529411: H3K4me3 WIBR1 20% O2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
6340857
Reads aligned (%)
80.0
Duplicates removed (%)
5.6
Number of peaks
26564 (qval < 1E-05)

hg19

Number of total reads
6340857
Reads aligned (%)
79.8
Duplicates removed (%)
5.7
Number of peaks
26507 (qval < 1E-05)

Base call quality data from DBCLS SRA