SRX018671
GSM482751: WCE Day2 seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Day2 pre-RA, seq
cell-line
HBG3
cell-stage
Day2
chip-antibody
none
fraction
WCE
agent
none (pre-RA)

Sequenced DNA Library

library_name
GSM482751: WCE_Day2_seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4920794
Reads aligned (%)
64.8
Duplicates removed (%)
9.0
Number of peaks
136 (qval < 1E-05)

mm9

Number of total reads
4920794
Reads aligned (%)
64.6
Duplicates removed (%)
9.6
Number of peaks
173 (qval < 1E-05)

Base call quality data from DBCLS SRA