SRX018656
GSM471812: Rh4, input DNA lane 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
Rh-4
NA
NA

Attributes by original data submitter

Sample

source_name
Rh4, input
cell line
Rh4
cell type
rhabdomyosarcoma
pax3-fkhr status
positive
antibody
None

Sequenced DNA Library

library_name
GSM471812: Rh4, input DNA lane 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13318649
Reads aligned (%)
60.0
Duplicates removed (%)
3.3
Number of peaks
124 (qval < 1E-05)

hg19

Number of total reads
13318649
Reads aligned (%)
59.4
Duplicates removed (%)
4.2
Number of peaks
438 (qval < 1E-05)

Base call quality data from DBCLS SRA