SRX018653
GSM471809: Rh4, input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
Rh-4
NA
NA

Attributes by original data submitter

Sample

source_name
Rh4, input
cell line
Rh4
cell type
rhabdomyosarcoma
pax3-fkhr status
positive
antibody
None

Sequenced DNA Library

library_name
GSM471809: Rh4, input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21124961
Reads aligned (%)
78.1
Duplicates removed (%)
21.8
Number of peaks
505 (qval < 1E-05)

hg19

Number of total reads
21124961
Reads aligned (%)
77.4
Duplicates removed (%)
23.2
Number of peaks
974 (qval < 1E-05)

Base call quality data from DBCLS SRA