Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
RD
Primary Tissue
Skelatal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
RD, input
cell line
RD
cell type
rhabdomyosarcoma
pax3-fkhr status
negative
antibody
None

Sequenced DNA Library

library_name
GSM471808: RD, input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
9231845
Reads aligned (%)
84.3
Duplicates removed (%)
15.5
Number of peaks
185 (qval < 1E-05)

hg19

Number of total reads
9231845
Reads aligned (%)
83.8
Duplicates removed (%)
16.2
Number of peaks
205 (qval < 1E-05)

Base call quality data from DBCLS SRA