SRX018626
GSM469864: HNF4a ABdomain ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNF4A

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HNF4a_ABdomain_ChIPSeq
cell line
HepG2
cell type
hepatocellular carcinoma
chip antibody
HNF4a AB domain

Sequenced DNA Library

library_name
GSM469864: HNF4a_ABdomain_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9321248
Reads aligned (%)
94.6
Duplicates removed (%)
3.6
Number of peaks
4165 (qval < 1E-05)

hg19

Number of total reads
9321248
Reads aligned (%)
93.8
Duplicates removed (%)
4.4
Number of peaks
4266 (qval < 1E-05)

Base call quality data from DBCLS SRA