SRX018625
GSM469863: HNF4a Fdomain ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNF4A

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HNF4a_Fdomain_ChIPSeq
cell line
HepG2
cell type
hepatocellular carcinoma
chip antibody
HNF4a F domain

Sequenced DNA Library

library_name
GSM469863: HNF4a_Fdomain_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
9231367
Reads aligned (%)
93.5
Duplicates removed (%)
3.8
Number of peaks
6228 (qval < 1E-05)

hg38

Number of total reads
9231367
Reads aligned (%)
94.3
Duplicates removed (%)
3.1
Number of peaks
6122 (qval < 1E-05)

Base call quality data from DBCLS SRA