Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa, ChIP_Seq
cell line
HeLa
chip antibody
anti-H3K4me3

Sequenced DNA Library

library_name
GSM501713: HeLa_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
6897698
Reads aligned (%)
56.8
Duplicates removed (%)
21.1
Number of peaks
18643 (qval < 1E-05)

hg19

Number of total reads
6897698
Reads aligned (%)
56.7
Duplicates removed (%)
21.3
Number of peaks
18608 (qval < 1E-05)

Base call quality data from DBCLS SRA