Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRF1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa, ChIP_Seq
cell line
HeLa
chip antibody
anti-Brf1

Sequenced DNA Library

library_name
GSM501711: HeLa_TFIIIB_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
21434339
Reads aligned (%)
79.2
Duplicates removed (%)
2.1
Number of peaks
601 (qval < 1E-05)

hg38

Number of total reads
21434339
Reads aligned (%)
80.6
Duplicates removed (%)
1.0
Number of peaks
369 (qval < 1E-05)

Base call quality data from DBCLS SRA