Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Retina
MeSH Description
The ten-layered nervous tissue membrane of the eye. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent.

Attributes by original data submitter

Sample

source_name
Retina, Nrl ko, IgG ChIP
strain
C57BL/6
genotype
Nrl-/-
age
8 weeks
tissue
retina
chip antibody
IgG

Sequenced DNA Library

library_name
GSM499740: IgG-ChIP-Seq, Nrl ko, 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
19572178
Reads aligned (%)
82.1
Duplicates removed (%)
27.9
Number of peaks
622 (qval < 1E-05)

mm9

Number of total reads
19572178
Reads aligned (%)
81.9
Duplicates removed (%)
28.1
Number of peaks
674 (qval < 1E-05)

Base call quality data from DBCLS SRA