SRX018101
GSM523221: DN-Gata3 [ChIP-seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
Double negative cells
strain
C57BL/6
cell type
Double negative cells
chip antibody
anti-Gata3 (558686, BD bioscience)

Sequenced DNA Library

library_name
DN-Gata3 [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8453624
Reads aligned (%)
92.0
Duplicates removed (%)
31.3
Number of peaks
1875 (qval < 1E-05)

mm9

Number of total reads
8453624
Reads aligned (%)
91.9
Duplicates removed (%)
31.5
Number of peaks
1878 (qval < 1E-05)

Base call quality data from DBCLS SRA