Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
GM12891
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM12891
cell line
GM12891
cell type
Lymphoblastoid cell
chip antibody
Pol II (8WG16)

Sequenced DNA Library

library_name
GM12891_Pol_II_ChIPSeq_Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
21341637
Reads aligned (%)
67.2
Duplicates removed (%)
4.8
Number of peaks
12268 (qval < 1E-05)

hg19

Number of total reads
21341637
Reads aligned (%)
66.2
Duplicates removed (%)
5.1
Number of peaks
12757 (qval < 1E-05)

Base call quality data from DBCLS SRA