Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM12878
cell line
GM12878
cell type
Lymphoblastoid cell
chip antibody
Pol II (8WG16)

Sequenced DNA Library

library_name
GM12878_Pol_II_ChIPSeq_Rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
6313794
Reads aligned (%)
95.1
Duplicates removed (%)
2.5
Number of peaks
9370 (qval < 1E-05)

hg19

Number of total reads
6313794
Reads aligned (%)
94.3
Duplicates removed (%)
2.7
Number of peaks
9612 (qval < 1E-05)

Base call quality data from DBCLS SRA