Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
GM12891
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM12891
cell line
GM12891
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
normal rabbit IgG

Sequenced DNA Library

library_name
GM12891_NFkB_II_ChIPSeq_IgG_Rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
12346675
Reads aligned (%)
66.3
Duplicates removed (%)
19.6
Number of peaks
527 (qval < 1E-05)

hg19

Number of total reads
12346675
Reads aligned (%)
60.7
Duplicates removed (%)
16.8
Number of peaks
623 (qval < 1E-05)

Base call quality data from DBCLS SRA