Antigen

Antigen Class

TFs and others

Antigen

RELA

Cell type

Cell type Class

Blood

Cell type

GM12891

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Sample

source_name

Lymphoblastoid Cells

biomaterial_provider

GM12891

cell line

GM12891

cell type

Lymphoblastoid cell

treatment

TNF-alpha induced (6h)

chip antibody

NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name

GM12891_NFkB_II_ChIPSeq_Rep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg19

Number of total reads

12203692

Reads aligned (%)

55.0

Duplicates removed (%)

7.0

Number of peaks

5631 (qval < 1E-05)

hg38

Number of total reads

12203692

Reads aligned (%)

57.1

Duplicates removed (%)

7.5

Number of peaks

5511 (qval < 1E-05)