Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

Lymphoblastoid Cells

biomaterial_provider

GM12878

cell line

GM12878

cell type

Lymphoblastoid cell

treatment

TNF-alpha induced (6h)

chip antibody

normal rabbit IgG

Sequenced DNA Library

library_name

GM12878_NFkB_II_ChIPSeq_IgG_Rep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

18443334

Reads aligned (%)

91.2

Duplicates removed (%)

9.5

Number of peaks

361 (qval < 1E-05)

hg19

Number of total reads

18443334

Reads aligned (%)

90.4

Duplicates removed (%)

10.3

Number of peaks

530 (qval < 1E-05)