Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM12878
cell line
GM12878
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
GM12878_NFkB_II_ChIPSeq_Rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
19366974
Reads aligned (%)
59.7
Duplicates removed (%)
2.2
Number of peaks
2978 (qval < 1E-05)

hg38

Number of total reads
19366974
Reads aligned (%)
61.7
Duplicates removed (%)
2.7
Number of peaks
2830 (qval < 1E-05)

Base call quality data from DBCLS SRA