Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM18951
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, Japanese in Tokyo, Japan, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM18951
cell line
GM18951
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
GM18951_NFkB_II_ChIPSeq_Rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
8455229
Reads aligned (%)
69.1
Duplicates removed (%)
2.0
Number of peaks
548 (qval < 1E-05)

hg38

Number of total reads
8455229
Reads aligned (%)
70.3
Duplicates removed (%)
1.7
Number of peaks
511 (qval < 1E-05)

Base call quality data from DBCLS SRA