Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM18951
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, Japanese in Tokyo, Japan, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM18951
cell line
GM18951
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
24377928
Reads aligned (%)
61.4
Duplicates removed (%)
3.1
Number of peaks
12492 (qval < 1E-05)

hg38

Number of total reads
24377928
Reads aligned (%)
62.9
Duplicates removed (%)
3.0
Number of peaks
12233 (qval < 1E-05)

Base call quality data from DBCLS SRA