Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM10847
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM10847
cell line
GM10847
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
GM10847_NFkB_II_ChIPSeq_Rep4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
20241529
Reads aligned (%)
50.0
Duplicates removed (%)
1.9
Number of peaks
1550 (qval < 1E-05)

hg38

Number of total reads
20241529
Reads aligned (%)
51.9
Duplicates removed (%)
4.0
Number of peaks
1436 (qval < 1E-05)

Base call quality data from DBCLS SRA